rs49056219 SNP Detail

Summary

• ID
  rs49056219
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTCAC TAACAGTTCC
  TTCTATCCTC AGAAGGAAAA ATGCAAGCAG TATCCTAACT CAAAAGGCAT CCTGAGTTTT
  CACTTCTACA CTAACAGAGC TGCCCACTGA TGACTTTATC TCCATCACAG CACGTGTGCG
  TTTGTGCGCT GCAGCATCCC CTCCACACCC ATCAGGACAC AGCGGGACGC GGAGATACTC
  C
  GTGTGTTTAG AAGAATTGAC CCTCTGGACA AGAGCTTAAA AGGAGCTTTT GATCCCAACT
  CCTCATAGGC AGAGTCAGGC AGATCTCAGC CAGTTAGAAG CCAGCCTGGT CTATGTAGTG
  AATTCCACCG ACAGCTAGAG CTACATAGTG AGGCTCTGCC TCAAAAAAAA AAAAAAAAAA
  AAAAAAGTTT CAAGTTGCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809528	ENSMUSSNP3781182	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49056219					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			1117 bp upstream
Cpgi904	CpG island 904			1033 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1135 bp upstream
Rr421284	regulatory region 421284			within coordinates
Rr421285	regulatory region 421285			704 bp proximal
Rr421286	regulatory region 421286			1131 bp proximal
Rr421287	regulatory region 421287			1293 bp proximal
Rr421288	regulatory region 421288			1625 bp proximal
Rr421289	regulatory region 421289			1700 bp proximal
Tssr9581	transcription start site region 9581			1980 bp upstream
Tssr14474	transcription start site region 14474			159 bp downstream
Tssr14475	transcription start site region 14475			1105 bp downstream
Tssr14476	transcription start site region 14476			1134 bp downstream
Tssr14477	transcription start site region 14477			1856 bp downstream
Tssr14478	transcription start site region 14478			1876 bp downstream
Tssr14479	transcription start site region 14479			1951 bp downstream