rs49057012 SNP Detail

Summary

• ID
  rs49057012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84107612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTAAAC TCTGTACCAG
  AAAGTACCCT AGGTATCCTG GAAGGCCAAA ATGGCGAAAC TTAACTACTC AAGTAGCTGG
  GTGTAAAGAT TAGTCCAATC AGTCCAGTTT AAAGGTTCCT ATCAACTTTC CAAAGAAGCC
  TGGAGGAGTG AAGAATTCTG ATTGTGAAAC TTTTGGAAAC CTGTTGGAAC CTTAGTGTTT
  Y
  GCGTGAGCAG TGGGTGGGAG TGAGTGGAGT GCGTGGGTGG AGACTTTCTG AAAGGGTGGC
  GCGTGTATGT CCTTAGCATG CTTTGGCCGT GCATGAAGCA GAGGATTGCT TCATCCTGTG
  ATGAAATGCT GAGACTGTGG AGAATAAAAA TTTGAACCCT GCCGACCTAA AAAGGGCTTG
  AGCTGTGTTC ACATAAAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147631368	ENSMUSSNP1865673	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49057012					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84107612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10337	CpG island 10337	488 bp distal
Gm58899	predicted gene, 58899	1592 bp downstream
Ptgr3	prostaglandin reductase 3	within coordinates
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	408 bp downstream
Tshz1	teashirt zinc finger family member 1	1781 bp upstream
Tssr152202	transcription start site region 152202	1800 bp downstream
Tssr152203	transcription start site region 152203	1309 bp downstream
Tssr152204	transcription start site region 152204	1281 bp downstream
Tssr152205	transcription start site region 152205	1244 bp downstream
Tssr152206	transcription start site region 152206	794 bp downstream
Tssr154126	transcription start site region 154126	1771 bp upstream