rs49057711 SNP Detail

Summary

• ID
  rs49057711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59240785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGATGGA TAAGCACAAG
  GCCGGGTCAC CTCATTAAGT TCACCTAATA TCCATCAAAG AGGCAGGAAA GTTAATGCCT
  GCCATTTGAA TCAACACAGG TATTGTCAAT ATACCCAAGG TTTAGCAAAC ATCTAACAAC
  AGTAGGACTT CTTGTAAAAT GGTGAGCCCG ATCTTGTTCT TACTTCTCTA GTAAAACAGC
  R
  TCAAAAGATT TCAGCAAATT TTGGTTGGGC AGCCTCTGAC TGGGCGGGAC CATCAAGCTC
  CCCAACTGCT TATGGGAGGA GTGTCTTGAG ACTGTGATCC CAGCTACTGG AGAGACTGAG
  ACAGGTCAGC CTGGCTACGC AGTGAGACCC TCAAGATCCC TCTCAGCCCA TTTCCTCCTA
  AAGGATGCTC TAAACATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52330499	NES15283260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		G
ss323321810	CHEV_10_58867711	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49057711					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52330499	NES15283260	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59240785 () rs orientation: forward

Symbol	Name	Function Class
Pla2g12b	phospholipase A2, group XIIB	within coordinates
Rr215348	regulatory region 215348	1816 bp proximal
Rr224847	regulatory region 224847	within coordinates
Tssr93483	transcription start site region 93483	1530 bp downstream
Tssr93484	transcription start site region 93484	1294 bp downstream
Tssr93485	transcription start site region 93485	1276 bp downstream