rs49058448 SNP Detail

Summary

• ID
  rs49058448
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32611235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCAGTGG TTTAGACAGG GTCTGTGGAG CCAGTTTGTC
  TGGGTGTGAA TCCCCAGTTA GTGGCTGTGT GACTTTGGGC AGACTACTTA ATCTCCCTGT
  S
  CTCCAGCTCC TGCGAGTGTG AACCGAGACT AATAATCCTT GGATAAAGAT GAAACCGGAA
  TATGTGGAAC ACCTTTACTC AGTGCTGGCC CAGGTCCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136249748	ENSMUSSNP2241574	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49058448					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32611235 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Tssr84278	transcription start site region 84278	2000 bp downstream
Tssr84279	transcription start site region 84279	1665 bp downstream
Tssr84280	transcription start site region 84280	516 bp downstream
Tssr84281	transcription start site region 84281	118 bp downstream
Tssr84282	transcription start site region 84282	42 bp downstream
Tssr84283	transcription start site region 84283	331 bp upstream
Tssr84284	transcription start site region 84284	1353 bp upstream
Tssr88691	transcription start site region 88691	1248 bp downstream