rs49058973 SNP Detail

Summary

• ID
  rs49058973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129577579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA CGTCTGTAGC TCTCCCTCCC
  Y
  GGAGCCAACA GAGAACCAAC CACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147446194	ENSMUSSNP6544372	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321314604	CHEV_4_129361030	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49058973					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129577579 () rs orientation: forward

Symbol	Name	Function Class
Gm68938	predicted gene, 68938	417 bp upstream
Mir7016	microRNA 7016	714 bp downstream
Tmem39b	transmembrane protein 39b	within coordinates
Tssr43555	transcription start site region 43555	949 bp downstream