rs49059560 SNP Detail

Summary

• ID
  rs49059560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTTGTAAGCC AGTCGGCCTG GTCTTTAAGT GGGGGGGAAG GAATGAGAGG
  Y
  GTCCTAAACC CATGAGATGT GGAGGAGGGA GCTTGGCCAA GATCTTCCCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss147462487	ENSMUSSNP164675	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321318872	CHEV_4_130380648	CHEVERUD	SCREENING_POP	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs49059560					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552044 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39282	transcription start site region 39282	1686 bp downstream
Tssr39283	transcription start site region 39283	1606 bp downstream
Tssr39284	transcription start site region 39284	1398 bp downstream
Tssr39285	transcription start site region 39285	1334 bp downstream
Tssr39286	transcription start site region 39286	1267 bp downstream
Tssr39287	transcription start site region 39287	1253 bp downstream
Tssr39288	transcription start site region 39288	1209 bp downstream
Tssr39289	transcription start site region 39289	1088 bp downstream
Tssr39290	transcription start site region 39290	1081 bp downstream
Tssr39291	transcription start site region 39291	935 bp downstream
Tssr39292	transcription start site region 39292	852 bp downstream
Tssr39293	transcription start site region 39293	1133 bp upstream
Tssr39294	transcription start site region 39294	1288 bp upstream
Tssr39295	transcription start site region 39295	1454 bp upstream
Tssr39296	transcription start site region 39296	1480 bp upstream