rs49059702 SNP Detail

Summary

• ID
  rs49059702
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30066565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCCTT ACTTAATAAG
  CGAGGCACTA ACTTGACAGG ACACGTATGG TGGCGTGGAG GTCAGGACTG AGCTGGACGA
  GACAAGCTGC AGAGTCATCC TGGGAGGTGA CTGCCACTAC TTAAGTCCAG AAAGATTTCG
  CCAGCCCATG TTGTAAAGGT CAAGTGGGGT CAGATGGAGA CAGCTCGTCT TTGATGGGAA
  M
  TGTGAAGCTT TCTCTGTGTA AAGCTGTGTC TAGAGAGCTC TAGTCTCGTT TCTTTGTTTC
  TTAGTTCAAG TTAAGTTGAA TAGAGTTAGC GTCTGGCTGA GTGCAGACCC AGGAAGAGAC
  TGACTGGTCA TCAAGAGAAG GACACAGAAG CCAGTCCTAA CCAGCAGAGG CTCAGTTATA
  CTTGTCAGCA TCTCTACTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60556113	NES16574253	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A		C	A	C	A		C
ss325355145	CHEV_17_29984536	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49059702					SNP	A	A	A	A	A	A	C	A	A	A	A	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556113	NES16574253	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30066565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8930	CpG island 8930	1559 bp proximal
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	965 bp distal
Rr330463	regulatory region 330463	836 bp proximal
Rr341132	regulatory region 341132	765 bp distal
Rr341133	regulatory region 341133	1177 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1192 bp upstream
Tssr143596	transcription start site region 143596	1056 bp downstream
Tssr143597	transcription start site region 143597	1033 bp downstream
Tssr143598	transcription start site region 143598	629 bp upstream