rs49059939 SNP Detail

Summary

• ID
  rs49059939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57387597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC ATGGTGAAGA TGCTCATGGG
  R
  TCCTAGGGAA TGAGGCAACT AGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62807948	NES17358185	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49059939					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807948	NES17358185	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57387597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	492 bp proximal
Gm56907	predicted gene, 56907	within coordinates
Rr529267	regulatory region 529267	1400 bp distal
Rr529268	regulatory region 529268	314 bp distal
Tssr5182	transcription start site region 5182	353 bp downstream
Tssr145371	transcription start site region 145371	1988 bp downstream
Tssr145372	transcription start site region 145372	312 bp downstream
Tssr145373	transcription start site region 145373	within coordinates
Tssr145374	transcription start site region 145374	91 bp upstream
Tssr148882	transcription start site region 148882	182 bp upstream
Tssr148883	transcription start site region 148883	89 bp upstream
Tssr148884	transcription start site region 148884	20 bp upstream
Tssr148885	transcription start site region 148885	10 bp downstream
Tssr148886	transcription start site region 148886	37 bp downstream
Tssr148887	transcription start site region 148887	61 bp downstream
Tssr148888	transcription start site region 148888	88 bp downstream
Tssr148889	transcription start site region 148889	125 bp downstream
Tssr148890	transcription start site region 148890	221 bp downstream
Tssr148891	transcription start site region 148891	339 bp downstream
Tssr148892	transcription start site region 148892	359 bp downstream
Tssr148893	transcription start site region 148893	573 bp downstream
Tssr148894	transcription start site region 148894	645 bp downstream
Tssr148895	transcription start site region 148895	1049 bp downstream
Tssr148896	transcription start site region 148896	1111 bp downstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates