rs49060219 SNP Detail

Summary

• ID
  rs49060219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165664851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCACAGAAC ACACTGTGTA TAAACACTGG AATCTTTCCG
  GTAAATGTCC TATCCCTCTC CCATCTCGTT TTTATTTCAT TTTATTATTA GAAATTTTGC
  Y
  TCTGAAACAA AGGCGATGGA GGTTTTGCAT CCTTGCTGTC ACCCTCTGGT CCCAGGTGTC
  CCCTAGCAAG AATGAGCTCA GGCAAACCTC CTCTCTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146008331	ENSMUSSNP3896616	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49060219					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165664851 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Gm71096	predicted gene, 71096	within coordinates
Rr422480	regulatory region 422480	218 bp distal
Rr422481	regulatory region 422481	186 bp proximal
Rr422482	regulatory region 422482	1914 bp proximal
Tssr268	transcription start site region 268	1641 bp upstream
Tssr9850	transcription start site region 9850	1390 bp upstream
Tssr14797	transcription start site region 14797	777 bp upstream