rs49060556 SNP Detail

Summary

• ID
  rs49060556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45227495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCCCGC GCAGCCTGCT
  CAAACTCCTC TCACCCCACC CTTTCCACCT TTAGGCACAG CCTGGGTGGG AAATGTCTTA
  ATTGACAAAG GTCAATTGCC TTCCCCTTTC CTTTTCACCT TACCCACTTC CTTCCTTCCT
  CCTCCTGTCT TTGCATATGA CTGTTGCTAC TTAGCACTTC TTCTAAGAAC CTGCTTGGTC
  K
  CTTCCCTGGG TTGGTAACTG AAGAGGAGGG AGTCCCTCCC AAGATAGGAT GTTGACAATG
  TTATAATCTG ATCACTGGGG CCCACTTTGC TATCCTTGAG GCCCCTTCTC TTGGTGCTTT
  CATTTCTCCT GAGCAAAATG TAGTTGTCAA CACACAGCAT TCAGAAGGCC CTTGGTGTAG
  AAGGTTACAG CCTCTTTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62358663	NES17228888	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49060556					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358663	NES17228888	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45227495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	186 bp distal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	152 bp upstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491040	regulatory region 491040	1833 bp distal
Rr491041	regulatory region 491041	within coordinates
Tssr4380	transcription start site region 4380	1226 bp upstream
Tssr125199	transcription start site region 125199	1860 bp downstream
Tssr125200	transcription start site region 125200	1835 bp downstream
Tssr125201	transcription start site region 125201	1566 bp downstream
Tssr125202	transcription start site region 125202	1427 bp downstream
Tssr125203	transcription start site region 125203	1366 bp downstream
Tssr125204	transcription start site region 125204	1119 bp downstream
Tssr128221	transcription start site region 128221	359 bp upstream
Tssr128222	transcription start site region 128222	168 bp upstream
Tssr128223	transcription start site region 128223	112 bp upstream