rs49061098 SNP Detail

Summary

• ID
  rs49061098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52691536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACTGGA TGCTTTTAAG
  TCTAATGAGG GTTCTGGATG CCTTATCCTG ATCCCCCTTG GATATTATGT GTTCCAGTTA
  GAAGGAGGCA CCACACTGGC ACGCTCCTTT CAATCTTTAC AGTTTATCCA AGCTCCACAA
  TGCTAAAACT GGCATCTGTT CTCTGTCACC TGGGGAGTTC CTTGTCCCTA CCTCATGTGA
  R
  GTTATTCAGG TCCACCTGAA GTATAGGTAG AAACATAGTC AGGGACATAG GCATCTGTGA
  TGGTTAACCT TGATTGGCAA GTAGATGGGA TTTAGAGTCA CCATGGAAAC AAACCTCTGT
  GTGTATCTGT AGATGAAGTT GGAAAGACCC CACCATGAAT GTGGGTAGCA TGGGGTCCTG
  TGCTGAGTAA AAAGGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61797334	NES17724062	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49061098					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61797334	NES17724062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52691536 () rs orientation: forward

Symbol	Name	Function Class
Rr272474	regulatory region 272474	1336 bp distal
Rr272475	regulatory region 272475	1265 bp proximal
Rr284094	regulatory region 284094	1426 bp distal
Rr284095	regulatory region 284095	1666 bp proximal