rs49061714 SNP Detail

Summary

• ID
  rs49061714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTTGTA TTCTGCCTTC
  TGCTTAACTC ACTGTACTTG TAAGGGTTTT CCCTGAGTTT TCTAATTGGG ATATTGAGGT
  TTTCAGTTTC ACCTTCATTT AAGCTTGTGT TCTTTTCAGC TTTTCTATCT CCATATTGAA
  TTCAGCTTTC GAATCCTGAA ATTTCAAATT ACTGTCATCA TTTCATTTGT GTTTTTTGGT
  Y
  ACCAGTCAGG CATTTATTAC TATCTTCTTG GAGTTCACTA AAATTCCTTG AATTCTTTGA
  TAATGTTTAT GATAATTCTT GAAAATTATA TATTGTGGGG TTCTTCTAGG TAGGTCTCAC
  TAGAGAACAC TTTTATCGGG ACAGTGAGTA GCTCAGTTTT TGCATGTAAG GCTCACAGAA
  TCTCACAGAA GAGGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147805151	ENSMUSSNP7058490	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49061714					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555882 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr46878	regulatory region 46878	1919 bp proximal
Rr374001	regulatory region 374001	789 bp upstream
Tssr20549	transcription start site region 20549	821 bp upstream
Tssr20550	transcription start site region 20550	883 bp upstream
Tssr26613	transcription start site region 26613	596 bp downstream