rs49061844 SNP Detail

Summary

• ID
  rs49061844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122036884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCCCTATCTG TCCTGTGCTG TGACATTTAT ACTATCATAG
  TTCATCTACA AACCCGTCAC TCCCAACTGC CACCAAGAGG TTTTAAAAAA TAGCTCTTTA
  R
  AAAAAACTTT TATTACAATA GATCAACTAG ACAAAGTGCA TTAATTGTGT AAGGCTGAGT
  TACAAATAAC TACTAAGCAA AGGTTGTCTC AATTGTTCTG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135737730	ENSMUSSNP3376334	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49061844					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122036884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1982 bp proximal
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1964 bp upstream
Rr584261	regulatory region 584261	121 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	16 bp distal
Rr584264	regulatory region 584264	618 bp proximal
Rr584265	regulatory region 584265	1507 bp proximal
Tssr31477	transcription start site region 31477	106 bp downstream
Tssr35443	transcription start site region 35443	1984 bp downstream