rs49062500 SNP Detail

Summary

• ID
  rs49062500
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44387341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGAAGC CTGGGGCCAG
  CCTGGGCTAT ATAGTGAATA CCAGCTCAGT CAGGCCTGCA TAATAACAAG GCCTCTTCCC
  CCCAAACAAC AGACGAAACC AACCAACAGC CAAGTCAACC CAAGTCCATT CCTGAATTGT
  TTTCTTCAGG GTGATGACGC ACTTATGGAC CTGTAAGGAT GGCTCAGTGG CTTTAGAGTA
  S
  TGGCGACTCT TCCAGAGGCC ATGGGTGTAT TTCCTAGCAC CCAGGTGGAA GCTTACAATG
  CCTGTAACTC CAGTTCCAGG AGATCTGATG CCCTCTTCTG GTGTCTATGG GCACTGCACA
  CAAAGTAGTG TGCAGACACA TGGAGACAAA ACACCCACAA GAACAAATAC AATCTCAAGA
  TAAATATAAA TAATAATAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136396102	ENSMUSSNP6231492	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49062500					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44387341 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm10023	predicted gene 10023	1880 bp downstream
Gm22540	predicted gene, 22540	367 bp downstream
Gm47204	predicted gene, 47204	668 bp downstream
Rr195028	regulatory region 195028	within coordinates
Rr203857	regulatory region 203857	within coordinates
Rr206312	regulatory region 206312	1459 bp proximal
Rr209142	regulatory region 209142	1141 bp distal
Rr209143	regulatory region 209143	260 bp proximal