rs49063123 SNP Detail

Summary

• ID
  rs49063123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53616170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGCTT GCCTACAAGA
  GTTCCAATTG ATCATGTGAT TTTTAAAAAA AGATTTATTT TTTTTATTAT ATGTAAATAC
  ACTGTAGCCA TCTTTAGACA CACCAGAAGA GGGCATCAGA TCTCATTAGG GATGGTTGTG
  AGCCACCATG TGGTTGCTGG GATTTGAACT CAGGACCTTC AGAATGAAGA ACAGTCAGTG
  Y
  GCTCTAAGCC ATCTCTACCT ACTAAGCCAT CTCATCAGCC CCGATCATAT GATTTTTAAA
  GAAACAATTC CCTACATTAT CAGCTTTCTT ACTTTGCTCT AGAACAAAGT ACTCTTCGAT
  CTCAAAAACT GGAAATACGC TTTAAATGTG ATTTAATCTC AACTATCCAA GGAATTCAGT
  TTCATTTACT TTTTTTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136502097	ENSMUSSNP7145624	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49063123					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53616170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21758	CpG island 21758	720 bp proximal
Rab39	RAB39, member RAS oncogene family	within coordinates
Rr401371	regulatory region 401371	1349 bp upstream
Rr679060	regulatory region 679060	875 bp proximal
Rr679061	regulatory region 679061	1352 bp proximal
Tssr89614	transcription start site region 89614	1341 bp downstream