rs49064125 SNP Detail

Summary

• ID
  rs49064125
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:78491727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACTTTG TTTTACATTT
  TTATTCGTCT AATGGTTTTA CCCATGTATA TAATAAACTT ATTTCATTTC CCTGTTCCCC
  TCCCTCACAC CCCTTCCCTG GCTCCCTCCT ATAAGAATCC TCTTCTTACT TTCACATCTT
  CTTTTTGTGT GGCACACTGC ATTTCATTAT AATTGCATGC CCAAGTATGG ATGGAGTGTT
  W
  TTCATTGGCG CAATGGCAAT TTAATCTGTG TCTACTTGAC TGAAGAAAGT GACACCCTCC
  ACAAGACTTA GTTGCTAAAA CCCTTCTGGG AAGGGTGGGG CATCATAGGC CACTCCCTTA
  TTTGTGATGA AACACTGAGA GAACTTGTGC AGAGGCTGTA GATAACTTCA TGAGCACAAG
  GCCATTTTAT GTTCAGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148411824	ENSMUSSNP1623148	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49064125					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:78491727 () rs orientation: forward

Symbol	Name	Function Class
4930570E03Rik	RIKEN cDNA 4930570E03 gene	189 bp upstream
D16Ium49	DNA segment, Chr 16, Indiana University Medical 49	1433 bp proximal
Gm59773	predicted gene, 59773	within coordinates
Tssr139126	transcription start site region 139126	146 bp upstream
Tssr139127	transcription start site region 139127	167 bp upstream
Tssr139128	transcription start site region 139128	183 bp upstream