rs49064401 SNP Detail

Summary

• ID
  rs49064401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84340953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACACAC ACACACACAC
  ACACACACAC TTAGAAACAT GGGCTAAAAC ATCGAGAGGA TTTTGCCCAA GAAGATGATC
  TGTAATAGGG GAGACAAGGC TATAGATAGA CTGGGAACGG TTTGAGGTTC AATTATGGCA
  GGCCTAAAAG GTCAAAGCGA GTAGTTATTT TATTTAGTAA CATATAAGAA CTTCTTAGAC
  R
  TGAGGAGGGA AGGAAAAGGA AGGGTGGATG GATCCTGACA GCTAAAAGAT GCTGCAAGTG
  TCAGGAATCA TTTTCCAGCC TGGAATTCTT TTAGGGTTCA CTAGTTTCTG GCCGTTGGGA
  AGGAAAATTA TATGAGAAGA ATGTAGAATT TCGTCTAGGG TTTAAATTGT TGCTCAGGCA
  CTTTTTGACT TACTACATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145209062	ENSMUSSNP77742	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49064401					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84340953 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	1236 bp distal
Rr400423	regulatory region 400423	1630 bp downstream
Rr650632	regulatory region 650632	1991 bp distal
Rr650633	regulatory region 650633	1799 bp distal
Rr650634	regulatory region 650634	1298 bp distal
Tssr73444	transcription start site region 73444	1924 bp upstream
Tssr73445	transcription start site region 73445	1911 bp upstream
Tssr73446	transcription start site region 73446	1846 bp upstream
Tssr73447	transcription start site region 73447	1827 bp upstream
Tssr73448	transcription start site region 73448	1806 bp upstream
Tssr73449	transcription start site region 73449	1781 bp upstream
Tssr73450	transcription start site region 73450	1754 bp upstream
Zfand6	zinc finger, AN1-type domain 6	1729 bp upstream