rs49064441 SNP Detail

Summary

• ID
  rs49064441
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116676880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAGCTGG AGGGAGCAGC TGTCAAGTGC CTGACATCCA
  TCACTCCCAT CTGGGTCTCA GGTCAGCTCT GATTGGAACT AGACATCACC TTACCCAGGC
  A
  GCTGAGCTAT GCTGGCCTCT TAGTCTGCAC CTGCAACAGG TGCTCCCTAG AGAGGTCAGC
  ACAAAGGAAG ATTTGTATCA AATTCCTTCC TCAACAACA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147281492	ENSMUSSNP1027184	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49064441					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116676880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	869 bp proximal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	224 bp downstream
Mutyh	mutY DNA glycosylase	243 bp downstream
Tssr42929	transcription start site region 42929	1197 bp downstream
Tssr42930	transcription start site region 42930	1222 bp downstream
Tssr42931	transcription start site region 42931	1789 bp downstream
Tssr42932	transcription start site region 42932	1805 bp downstream
Tssr42933	transcription start site region 42933	1818 bp downstream