rs49065078 SNP Detail

Summary

• ID
  rs49065078
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31765253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACTGAAA CCATTGCATG
  GTGGCACAAT CACATGTCAT CACACACATA CCATGTGCCT GCCTCATTGT GCAGTGGCTA
  TGACAAAATA ATCTGAACAT GTCTGTTCAT GCATGTGCCA AGTCCCAGCA CCATCATCAT
  GCATCATGCG CTAACCTGTT CACAAGAATG CCATGTTCCA GTTCTGTCAA GTGGCAGTGA
  W
  GCTATGCTGT GTCCCAGCAC TGTCACGAGG TAGTGTGGGC ATACCTGTTC ACACACAGCA
  GTGTACCAGC TCCATAACAT GATGGCTCAG GACACATCTT CACATGTATG GTGTGATCTG
  TCTATCATGG GGATACCTAT TTACAGGCTA TGTCTCATCC CAGTCATGTG GCAATGTAGG
  CACACCTTTT CCACACTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012844	NES17430123	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49065078					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012844	NES17430123	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31765253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	1637 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr405571	regulatory region 405571	1943 bp upstream
Rr535275	regulatory region 535275	within coordinates
Rr535276	regulatory region 535276	294 bp proximal
Rr535277	regulatory region 535277	342 bp proximal
Rr535278	regulatory region 535278	883 bp proximal
Rr535279	regulatory region 535279	1991 bp proximal