rs49067189 SNP Detail

Summary

• ID
  rs49067189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT GGTCCAACGA GTCTCTCTTT
  R
  GTTGTGTCTC ATGCTACTCA GGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145708983	ENSMUSSNP4495206	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325406548	CHEV_17_47866810	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49067189					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040786 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	848 bp proximal
Tssr5147	transcription start site region 5147	1110 bp downstream
Tssr5148	transcription start site region 5148	548 bp upstream
Tssr5149	transcription start site region 5149	1622 bp upstream
Tssr145004	transcription start site region 145004	1119 bp downstream
Tssr145005	transcription start site region 145005	1098 bp downstream
Tssr145006	transcription start site region 145006	1069 bp downstream
Tssr145007	transcription start site region 145007	1037 bp downstream
Tssr145008	transcription start site region 145008	1016 bp downstream
Tssr145009	transcription start site region 145009	988 bp downstream
Tssr145010	transcription start site region 145010	606 bp downstream
Tssr145011	transcription start site region 145011	587 bp downstream
Tssr145012	transcription start site region 145012	570 bp downstream
Tssr145013	transcription start site region 145013	518 bp downstream
Tssr145014	transcription start site region 145014	219 bp upstream
Tssr145015	transcription start site region 145015	281 bp upstream
Tssr145016	transcription start site region 145016	292 bp upstream
Tssr145017	transcription start site region 145017	737 bp upstream
Tssr145018	transcription start site region 145018	749 bp upstream
Tssr145019	transcription start site region 145019	780 bp upstream
Tssr145020	transcription start site region 145020	801 bp upstream
Tssr145021	transcription start site region 145021	827 bp upstream
Tssr145022	transcription start site region 145022	859 bp upstream
Tssr145023	transcription start site region 145023	886 bp upstream
Tssr145024	transcription start site region 145024	997 bp upstream
Tssr145025	transcription start site region 145025	1341 bp upstream
Tssr145026	transcription start site region 145026	1597 bp upstream
Tssr148459	transcription start site region 148459	1060 bp upstream
Tssr148460	transcription start site region 148460	1008 bp upstream
Tssr148461	transcription start site region 148461	996 bp upstream
Tssr148462	transcription start site region 148462	953 bp upstream
Tssr148463	transcription start site region 148463	580 bp upstream
Tssr148464	transcription start site region 148464	495 bp upstream
Tssr148465	transcription start site region 148465	260 bp downstream
Tssr148466	transcription start site region 148466	273 bp downstream
Tssr148467	transcription start site region 148467	768 bp downstream
Tssr148468	transcription start site region 148468	799 bp downstream
Tssr148469	transcription start site region 148469	889 bp downstream