rs49068036 SNP Detail

Summary

• ID
  rs49068036
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153724816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA AGATGCAAAG AAGTGGTTGA
  W
  TGTATCTAAG TGGTCTTGGA AATCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145750716	ENSMUSSNP1720393	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49068036					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153724816 () rs orientation: forward

Symbol	Name	Function Class
Rr13180	regulatory region 13180	1616 bp distal
Teddm2	transmembrane epididymal family member 2	472 bp downstream
Tssr14286	transcription start site region 14286	1674 bp downstream
Tssr14287	transcription start site region 14287	1966 bp downstream
Tssr14288	transcription start site region 14288	1978 bp downstream