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rs49068036 SNP Detail
Summary
  • ID
    rs49068036
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:153724816 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGAGA AGATGCAAAG AAGTGGTTGA
    W
    TGTATCTAAG TGGTCTTGGA AATCG                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss145750716 ENSMUSSNP1720393 ENSEMBL ENSEMBL_Sanger f SNP A A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs49068036 SNP A A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:153724816 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr13180 regulatory region 13180 1616 bp distal
Teddm2 transmembrane epididymal family member 2 472 bp downstream
Tssr14286 transcription start site region 14286 1674 bp downstream
Tssr14287 transcription start site region 14287 1966 bp downstream
Tssr14288 transcription start site region 14288 1978 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory