rs49068413 SNP Detail

Summary

• ID
  rs49068413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84344427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGGAGACA AGTGTTTTTT CCTGCTGAAC CATCAAAATG
  ACCTTATTTA TGTATCTTTT TTTATACCAG AACAATACTG TTTTGATTAC CACAGTCCAA
  Y
  TTAGAATAGA TCTAAATTTC TTTTTAGTTG TATTTCTTTA CTGGTAAAAG CCAGGTACAT
  GTTTTCCCCA ATTTTTGCAG GGGGAAAAAA AAAAGTCTGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61662008	NES17609222	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49068413					SNP	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61662008	NES17609222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84344427 () rs orientation: forward

Symbol	Name	Function Class
Ptgr2	prostaglandin reductase 2	within coordinates
Rr469618	regulatory region 469618	1697 bp proximal
Tssr114334	transcription start site region 114334	1431 bp downstream