About   Help   FAQ
rs49069219 SNP Detail
Summary
  • ID
    rs49069219
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr16:6804985 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TAGCT GAGCAGCCAA TGGTGTGCTC
    G
    CTGTGCAGGC ATGAGGATGA TCGAC                                      
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
DBA/2J
LG/J
SM/J
ss147788418 ENSMUSSNP4396761 ENSEMBL ENSEMBL_Sanger f SNP G G
ss325101910 CHEV_16_6987214 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
DBA/2J
LG/J
SM/J
rs49069219 SNP G G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:6804985 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 Intron
Rr511178 regulatory region 511178 635 bp distal
Tssr136955 transcription start site region 136955 413 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
07/22/2025
MGI 6.24
The Jackson Laboratory