rs49069441 SNP Detail

Summary

• ID
  rs49069441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128782832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCAACTG AGGGGAGGCC
  AGAGGAAGTC TTCCACTAGA TTTAGTCACA GGACAGATTC AGCAGGAAGG AAAGGCTCTC
  ACACGTGCAG GGTTAGCTGT TCCCAGTTGG TCTATTGATC TTAACCGCTG CCCAGGACAA
  AGGAATCACA AGGATATTCC TGGGGTCATT GCACTCAGCC ATGGGATCTT TGAAAGGCCA
  R
  ACTCTTCAGT CTTACAGAAG TCGGCGACTC CGGGTCCCTG CATCTCTTAG CAAAGCTCAA
  GAGAATCTCC TGTTTGAGAA CCTACCCACA GCCTGTCCTC TTCTGTCTTT ATTTGGGACT
  GAAAATTTCA GAGCCTTCCA GTAGACCTCA GGGACTCTGG TCAGGCTTAA CAATGCTCCG
  GGACTTCTAT CTTTTGATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60795398	NES16468550	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49069441					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795398	NES16468550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128782832 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	within coordinates
Rr417836	regulatory region 417836	1954 bp proximal