rs49070140 SNP Detail

Summary

• ID
  rs49070140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73293502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTATAC TGCTGCTTGG
  TTTCCTCCAA GAGGGACAGA CAAGATCTCT AAGCAGATTT GTACAATGAA GACAGAGACC
  ATGGGAGAAG CAGAAGATGG GCAGCCACGA AGACTTGCTT GCCTTCGTTG GGTTCTCGGA
  AGCCACTGCC CTGGCCAAGG ACCAAGGATA GCCTGAGAAT GGTATTTGGA TCCTTTGTGA
  R
  GGCAGCTGGC ATTGGGTGTC CTCATTTTCT CCCCAGAACA AAAGATGCCA GGCGTCACCC
  AATAACTAAG GTGGCTGTTA ATCTGCTTTT CCAAAGCAGA ACCAACCAGG GCAGTTACAC
  ACTCCTTTGT GTCGCTTGGT GTTCTACTGT TACAGAGGGA TATGCATGCC ATTCTGTAGT
  TAAAATGTAG ACATCTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62893067	NES17390927	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A	G	A	G	G
ss145927741	ENSMUSSNP5775026	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49070140					SNP	G	A	A	A	A	G	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62893067	NES17390927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73293502 () rs orientation: forward

Symbol	Name	Function Class
Gm23649	predicted gene, 23649	1291 bp upstream