rs49071339 SNP Detail

Summary

• ID
  rs49071339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81350442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAAAGTA GCTGTTGATA
  ATCACAGGGA CTCAACACAC TTTCTGCCCT TGCAATGAGT GCAAAGATTA CCCTGTGTGT
  ATGTGCCTAG TGACCATGGT CGATACCTTA TTCTGTAATA GCAAAACCCT GGTGTCATTG
  TACATAAGTG GGAAGGAAGA ACAGCCTTCC AACCCTAGAG TTTCAAGCAT TACAGAGAAC
  R
  TGAAGCACAG GCTATGACTC TTCCTTAGTC AGGAGACTAT GTGAGGGTTG GTGGGGCCAC
  CACAATTCTG CTCACCTCAG GATCTGAGCT CAGCTTGGGT CTTGCAGTGA TGAACCACCC
  AGAGTCCTCA CTGTCAGTGA GGACCAGAAC ATTGGAGTTC GGTGCATAAG ATAAACCCTC
  TGGGCCAACT ATAGGATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63202829	NES17465536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49071339					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63202829	NES17465536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81350442 () rs orientation: forward

Symbol	Name	Function Class
D18Mit127	DNA segment, Chr 18, Massachusetts Institute of Technology 127	705 bp distal
Gm30192	predicted gene, 30192	within coordinates