rs49071386 SNP Detail

Summary

• ID
  rs49071386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:37805618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTCTGG GGTCGGGGAG
  GGTAGTGGTG GCGAACTGTC CACATGTGCT GGAACCTGTC AATCAAGATA ATATTCATGG
  GCCAATCTGA TGGAGGCAAT TCCTCAGTCA AGGCTCCCTC TTCTCAGGGG ATTCCGGTTT
  GTGTCAAGTT GACAAACACT AAGAAGCTCC AAGCAGATGG AAGATTTTCT GATAAAATCT
  R
  GAAGCTATAA ACCAACTTTC ACAACTAGCT GTTTAAAGAG CAATGTTTCA GGGGCAGTGC
  TTGTCCGTCA ATGAGGAAAG CCCACACCGC CTGCCCCTAC CACCACATGA CAATGAGTTG
  AACCTCCAGA AACCATGAGC CAAGATAAAT CTTTTTTTTT TTCTTCAAGG ATTTTTAATA
  TCAAGCATCC TATCTCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61139048	NES16653115	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49071386					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61139048	NES16653115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:37805618 () rs orientation: forward

Symbol	Name	Function Class
D5Mit354	DNA Segment, Chr 5, Massachusetts Institute of Technology 354	494 bp distal
Stk32b	serine/threonine kinase 32B	within coordinates