rs49071394 SNP Detail

Summary

• ID
  rs49071394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96094941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC AGTGGCAAAA GGGAAGTGGC
  Y
  GAGTGAATTA TCAGGATAAT GTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132675334	ENSMUSSNP6051252	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49071394					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96094941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	278 bp distal
Gm11538	predicted gene 11538	within coordinates
Gm30134	predicted gene, 30134	489 bp upstream
Rr455322	regulatory region 455322	1897 bp distal
Rr455323	regulatory region 455323	1518 bp distal
Rr455324	regulatory region 455324	659 bp distal
Rr455325	regulatory region 455325	within coordinates
Tssr104437	transcription start site region 104437	657 bp downstream