rs49071474 SNP Detail

Summary

• ID
  rs49071474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162955199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTTTTTT CACTAATTTT TATTCCATGC ATATGCACAC
  ACACATAGAG AGATGTTTAC ATATTCCTAA ATATAATTTG CTTAGTCCAT ATAAAATTAC
  Y
  TGTATGAATG TTTTATGGGC TGACCATTTG GGACTGAACA AACAATTGGC GTGTGCTCTT
  CACGGGGAAA GACCACCTCT TCTGCCCCCA GCTTTCCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145951655	ENSMUSSNP1751114	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49071474					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162955199 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	1594 bp distal
Rr407202	regulatory region 407202	within coordinates
Rr422057	regulatory region 422057	793 bp distal
Rr422058	regulatory region 422058	1625 bp proximal