rs49072040 SNP Detail

Summary

• ID
  rs49072040
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114480267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTACAGAA ATAAGTTGCT
  GCTTACACAC ATCAAAAACA ATAATATTAA AATCCCACCA GCTAAGATTG CTGCTAGTAC
  CATGTGGTTA TTATCAAGTA GCAATGGTTT ATTCCAAGTA GTGATCATCT TTAACTGTTA
  TTTCATGGCA ATTTGGAATG ACCTTAATAA ACTACAACTT ATTTTTTATG CATACTAGAC
  W
  TTTGATAAAA ATAATAATGG CAACTAAAAC AGTCTAAAAT GATAGTATTT TTATATTAGT
  AGTATTATAC TATAAAACAT TATCCCAGAA AGCTTTGAAA TGACAGCTGC CCTTCTCCAC
  CCTCTTAAAA AAAAAGCCAG ATTTATGAAT GACTAAAAGC GTCTTATTTT ATTGGCTTTA
  GATTAGAGGC ACACTCATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62042864	NES17146520	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49072040					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62042864	NES17146520	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114480267 () rs orientation: forward

Symbol	Name	Function Class
Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	within coordinates
Rr275010	regulatory region 275010	1734 bp proximal
Rr282460	regulatory region 282460	within coordinates