rs49072346 SNP Detail

Summary

• ID
  rs49072346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39296656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTAGG TGAGTTGAGT
  CCATTGATAT TGAGAGATAT TAAAGGCAGA TGATTGTTAG TTCCTGTTAT GTTTATTGTT
  GTAGGTGGCA TCATCTGCAT GTGATTCTCT CATTTTGGTT TTGTTATGAG ATGATTAATA
  CCTTGTTTTT TATTTGGTGT ATATACTATT ATATGTATTG TGGCACATAA TTAATTCCAA
  R
  CTCTAGGGAG GTAAAGACAG GTGGACATCT GGTAGAGGCA GGTGGATATC TGTGAGTTCC
  AATTTGGTCT TTGAGTTCTT GCAGATGCAG GGCTATGTAG AGAGAGCCTA ACCCCAAAAC
  AAAACAAAAA CCGAAGAGGA AATAGACACA TACATACAAA CATACATACA TACAGAGAGA
  GAGAGAGAGA GAGGGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147663765	ENSMUSSNP3772567	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49072346					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39296656 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	within coordinates
Tssr131153	transcription start site region 131153	1037 bp upstream
Tssr131154	transcription start site region 131154	1063 bp upstream
Tssr131155	transcription start site region 131155	1091 bp upstream
Tssr131156	transcription start site region 131156	1307 bp upstream