rs49072628 SNP Detail

Summary

• ID
  rs49072628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46249065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGTTGG ACTCTGTCAT
  TCAGCTGAGG CACCTCGGGA ACAGCAATGC TGTTTCTGAG TTGGTTCAGA AAGCGTGGGT
  TCATGTGCCT CATGTGTGTC GGCACCTAGA GGTTGTGTTC TGAATCTGGG TATATGTATC
  TGAGAGTGTC CTCGTGATAA GGTGAACTTC CTGGGCGTGT CACCTGTGTA AATGGGTGTG
  Y
  GCATCTTGAG TGTGTGCCTG GATCTTTTGG TCTGTGCTTC TTTTCATCGG GGTGTGAATA
  GATGTAGGAG GCTGTATTTG TGTAGGTGGA GGTGGGTCTG GGTACAAGTC TGCTATGCTT
  TAGGTATGAG CATATATCCA CAGTGGTGTG CCTGTCCAGG TGGGTAGGTG AAGGATGGTG
  GCAGGTGAGT GGCTGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61392169	NES16761196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49072628					SNP	C	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392169	NES16761196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46249065 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	within coordinates
Rr678124	regulatory region 678124	within coordinates
Rr678125	regulatory region 678125	175 bp proximal