rs49072729 SNP Detail

Summary

• ID
  rs49072729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164946107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGACAGTGGC CCAGGGTCGC AACCCCTCAT CTCACGACAA
  CCTTGGAATA TGAGTATCAT TGAACAAACA AGAAGGCGAA AACTCAGCCA ACTTCAAAAC
  Y
  GTGCCAGTTT GCCCACTCAA CATGGCAGGG CTGGCTTCAA ATTTGGTCTC TTCATCTCCC
  AAGATGATGG TGACATTCCT CTCCCACACT GGATTACCAT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145994723	ENSMUSSNP4164379	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49072729					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164946107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi947	CpG island 947	1954 bp proximal
Gm70481	predicted gene, 70481	527 bp upstream
Rr396491	regulatory region 396491	1721 bp upstream
Rr422319	regulatory region 422319	521 bp proximal
Rr422320	regulatory region 422320	734 bp proximal
Rr422321	regulatory region 422321	1997 bp proximal