rs49073429 SNP Detail

Summary

• ID
  rs49073429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110666239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTGGAG AGATGGCTCA
  GTGGTTAAGA GCACTGACTG CTCTTCTGAA GGTCCTGAGT TCAATTCCCA GAAACCACAT
  GATGGCTCAC AACCATCCAT AATAAGATCT GACGCCCTCG TCTGGTCTGT CTGAAGACAG
  CTACAGTGTA CTTACATATA ATAAATAAAT CTTAAAACAT AAATAAAAAA TAAAAAAGAC
  Y
  CAAGCATCAT GCAGGAGAGT TCCATTCTCA GCACCCATGT AGCAGCTCAC AGCTGTCTGT
  AACTTCAGTT TTAGGGAATT CACACCCTCA CACAGACCTA CATTCAGGCT AAACACTAAT
  TGCACGTTAC GACGGCAGAA ACCTAAAATG TCTAGGCATC TCTGCCCTCA TGCCCTTTCT
  AGATGTGAGT TCAAAATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138692773	ENSMUSSNP4468444	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49073429					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110666239 () rs orientation: forward

Symbol	Name	Function Class
Gm60092	predicted gene, 60092	227 bp downstream
Rr472970	regulatory region 472970	730 bp distal
Rr472971	regulatory region 472971	302 bp distal
Rr472972	regulatory region 472972	71 bp distal
Rr472973	regulatory region 472973	863 bp proximal
Tssr115233	transcription start site region 115233	701 bp downstream