rs49074115 SNP Detail

Summary

• ID
  rs49074115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185018408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTTCAT CTAAGGCCAG
  TGTAAAGCCT GCTACATTGA AATAGCTTCG TAATATATGA TTCCTTGTGA TTTAAAATCA
  TGGAAAACTA AACTTAGTAC CAGTAAGCTT ACACCGATTA TAGCATTCAC TTAGAAGTTG
  CTATAATCCA CTTCATTAGG AAACAATATC TTACAGTGCA CACACAGCAG CAGCAGAGCA
  Y
  GCCCTTCCAC CTCACGGGGT GGAGTGCTGG GCAACTAGCT TCTACTTAGT AGATTAGACA
  TCCTTGGAAA TCAATCCAGT ATTGGGTTGT TTAAGAAATG CTCTATTTAT CTAATGTCAA
  TGTATTGTTA AGTAGTGAAT TCTGTATATA CTGTTATTCC TGTCTATTCA TTATTGTGAA
  CTTATGTATA TTAGTGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146426532	ENSMUSSNP4316136	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320174458	CHEV_1_187110090	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49074115					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185018408 () rs orientation: forward

Symbol	Name	Function Class
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	431 bp downstream
Rab3gap2	RAB3 GTPase activating protein subunit 2	within coordinates
Rr425360	regulatory region 425360	669 bp distal