rs49074254 SNP Detail

Summary

• ID
  rs49074254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122630228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTGGTA AGGCACTTGC
  CCAGCACACA TGGGCTGCGG GTTTAGTCCT CAGCATCACA TACAAGCACA GACCACAGGG
  GACATGATAT AAAAGCCAAA CAGTCAGAGA GACGGCAACT CTGTATCACT GGGCCCTTTA
  CGGTGGACAA AGGATGGCGC TTCTGGGCTT CACAGAGGAA GTTAGCACCG GAGAGCTGGC
  R
  CTTCCTGTTG CTTTGTGTAC AGAAATGCAG CATCTGAGAG TGTCATTGTT CACATCTTAT
  TCATCTAGAA TGGCGCAAAT TAATATGGAA GAAAGACAAG AAAGCAAGAG AGGGGGGAGG
  GAAAACCAAG AAGGATGGCT GGGAAATTCC GGATGTGCTC TTTTTATTGT TTGTTTTTCA
  AGACAGGGTT TCTCTGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938546	NES16184793	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49074254					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938546	NES16184793	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122630228 () rs orientation: forward

Symbol	Name	Function Class
Rr638242	regulatory region 638242	966 bp proximal
Tssr58692	transcription start site region 58692	1312 bp upstream
Tssr62939	transcription start site region 62939	1103 bp downstream