rs49076832 SNP Detail

Summary

• ID
  rs49076832
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCATCCT TCCCTGGTAT TGATCCAGAG
  GACCTCATTG GGAACAAGGA ATGCATGCGG AACTCGAAGA GAGGGATGGG TAGGGGCTGA
  GAACGGAAAC ACGCCTGCCT GCTTATCACC TGGGTGGGGC AGAGGGAGGA GGAGGGAGCG
  K
  CGTGGGAGAT GGAACAGTCA GAGCGTGGCC AGTTACTCGG GCGTTTCCAT ATATAAATCA
  CTCACAGACA GACACACAGA GTCCTTCATT GCTCCCTCTG GCGGCAAGCA GAGCTTCATC
  TCTTTCTCCA GGAACCTCAG CTCCTAGATG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145546332	ENSMUSSNP1488068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss319993383	CHEV_1_137685436	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49076832					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716597 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	566 bp distal
Rr419277	regulatory region 419277	859 bp distal
Rr419278	regulatory region 419278	within coordinates
Rr419279	regulatory region 419279	88 bp proximal
Rr419280	regulatory region 419280	875 bp proximal
Rr419281	regulatory region 419281	1146 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron