rs49077281 SNP Detail

Summary

• ID
  rs49077281
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TCTCTGGCCC TGGCCTTTCC
  C
  TCTCTGCCTT GAGGGTCCTG CGCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136517960	ENSMUSSNP3528866	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322971870	CHEV_9_57112412	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49077281					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171888 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1993 bp upstream
Cpgi21813	CpG island 21813	1703 bp distal
Gm68485	predicted gene, 68485	659 bp downstream
Gm68491	predicted gene, 68491	within coordinates
Rr679624	regulatory region 679624	1503 bp distal
Rr679625	regulatory region 679625	539 bp proximal
Tssr89771	transcription start site region 89771	1996 bp upstream
Tssr89772	transcription start site region 89772	1808 bp upstream
Tssr89773	transcription start site region 89773	1184 bp downstream
Tssr89774	transcription start site region 89774	1202 bp downstream