rs49077531 SNP Detail

Summary

• ID
  rs49077531
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114579846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAAATTC AAACCGAAGA CAGTAGCCTT TTACAACAAA
  TTCATAGCAC TATAGCAGAC AGAACCTTGG AGGTTAGCAT CTAATTTTCT AACTAAAGGT
  C
  ACCCAAAACA ACTGGGCATG GAGGCCTGTA ATCCTAGCTA CTTGGGAGGC GGACTTGGGG
  AATTTTGAGT TCAAGGCCAG TCTGGGCAAT TTAGTGAGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145776722	ENSMUSSNP5755751	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49077531					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114579846 () rs orientation: forward

Symbol	Name	Function Class
Rr174139	regulatory region 174139	1046 bp distal
Rr179523	regulatory region 179523	355 bp proximal
Rr179524	regulatory region 179524	1355 bp proximal
Tssr82999	transcription start site region 82999	1671 bp downstream
Tssr83000	transcription start site region 83000	1703 bp downstream
Tssr83001	transcription start site region 83001	1719 bp downstream
Tssr83002	transcription start site region 83002	1734 bp downstream