rs49078216 SNP Detail

Summary

• ID
  rs49078216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25207451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTATTG TATAGTAGAA
  ACCAGCTGAA TAAATACCAT TGTAAAATAT TCTGTCATTA TTTTGAATTC ATTTCGGGAC
  AACACCCATA TGATTCACAC TTCTGAAATA ATTGAATTTG AAATATTTTA ACTTTCATTC
  CACTCTCTGT CTGTGTGCAT ATGGGTTAAG GAAGGGAGGG AGGCGCATGC CCTGTCATCC
  Y
  TGTGGAGATC GGAGAAGAGT TTTGTAGAAT CGGTTCTCTT TCTGCTTTTT CTTTTTCTAC
  TTTGCATGGT AGGCACCTTT ACTTTCTTTG TTCCCCTGTA ATAGGTTTTT GTATTTAAAT
  ACGGACAAGA AAGCACCAGA GGTCTCATTT AAATAAAAAA AAAAAACCAA GAAAGATTTA
  GTAGAAATAC TGCAAATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136234449	ENSMUSSNP3065659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49078216					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25207451 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1647 bp upstream
Tssr84137	transcription start site region 84137	1672 bp upstream
Tssr84138	transcription start site region 84138	1720 bp upstream