rs49078246 SNP Detail

Summary

• ID
  rs49078246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32180103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCCTGGG GATCATTTCA
  CATAAGGAAA TCTGGCACTG TTTGACAGCT ATAAGAACCA CAGGGGGAAA TGACAATGCT
  TGATGGTGAC TTCTAACAAA GAGAGTGGAC CATCCAAATC TTTAAATACA AGGCGGGGCA
  ATTCACCTCC CTCTGAGCCA CTGAGAAACA TCTCAACAGC TGAGATGAAG GATCACCCCT
  Y
  GGTGTCCAGG CTTTGTAACA CCAATAGATG AGATGGACCA TCTTGATTTA ATTATGCCTT
  TAGATTTTAG ATGTTTAAAA CTCAACAAGT TATTTTCCCA TTTCCCATTC ACCACCTAAG
  GGGGCCTTCC AACCGCCAGC GGTGTCCTTT GGGCTACCTC AGAGGCCGTT GTTCCTCAAG
  CCGTCCAAGT GTTACCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63246562	NES17481780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49078246					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246562	NES17481780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32180103 () rs orientation: forward

Symbol	Name	Function Class
Gm50210	predicted gene, 50210	1479 bp downstream
Sgms1	sphingomyelin synthase 1	within coordinates