rs49078324 SNP Detail

Summary

• ID
  rs49078324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82930061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAAGAA GGTTGGGAAA
  GCATCTAAAT CTGCATGTGG CGTGTGCCCA GGCAGACTGC GAGGGGTTCG CGCTGTGAGA
  CCCAAAGTCC TTCTGAGACT GTCTAAGACC AAGAAGCATG TCATGACGCA GGGCCTATGG
  TGGGTCCACG TGTGCCAAGT GTGTCCGTGA CGGGATCAAG CAGGCTTTCC TATTGAGGAG
  Y
  AGAAAATCGT TGTGAAAGTG CTGAAGGCAC AAGCACAGAG TCAGAAAGCA AAATAGATAT
  GCAACTATTT TAAGTAATAA AAATCAAGAC TTGGAAAAAA AAAAAGAATG AGTTTGTTGC
  TGGAGATGTG GCTTAGTGGT AGAAGACATT AAAGTTACTG TGTGGTATGT GTAAGGTCCC
  AGGTTCAACC TTCAATCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904328	NES15955917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49078324					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904328	NES15955917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82930061 () rs orientation: forward

Symbol	Name	Function Class
Gm19287	predicted gene, 19287	within coordinates
M1ap	meiosis 1 associated protein	within coordinates
Tssr57262	transcription start site region 57262	337 bp downstream