rs49079173 SNP Detail

Summary

• ID
  rs49079173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48953319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATCAGTT CTGGGGAGGC
  TGTTGTTGTC CTGAACTTTT ACTGCTGCCC AAGCCAGACA GGAGACTTGA GGTCCGGGTG
  CCCAGGGTTA TGGGTGGGGG TGGGGGGTAC TCTCTGAACA CATTAAACCT TCTGAGGATA
  GTTAAGGTTT CTGAGAACCT CTGGAGAGTC ACATTAGGAT TAGAGGACGT GGAGCTGCCC
  W
  GTCCCGGAAG TCTCAGAAAG AAAAGCACAG ACCCAGTCTG CAGCAGGTAG AGAACACTGA
  GGGGGAAACA AAGTATCCAA AGCCAGGTAC CTGCCTGTCC CCTCCTCCCC CTCTAGGGTT
  TACGGAAGTC CTTTCTCTGG CAGCTACCAG GTGTGTTTGA AAACACCCAA GCTTTATCCT
  TTACGTAGCA GGAAACTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61005710	NES16117553	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49079173					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005710	NES16117553	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48953319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	613 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr167850	regulatory region 167850	81 bp proximal
Tssr66792	transcription start site region 66792	250 bp upstream
Tssr66793	transcription start site region 66793	509 bp upstream
Tssr66794	transcription start site region 66794	680 bp upstream
Tssr66795	transcription start site region 66795	710 bp upstream