rs49079606 SNP Detail

Summary

• ID
  rs49079606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112575156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAACCTA TAGTTAGAGA
  AGCTCAGCTT TAGTTCATAG TCCCGTTGGC AGAATAATTT GATATTAGGC AACTGTGATT
  GGAAGGTTGT CTGTGCAACA TGAATGAAGG TCCTGAGCTG ATACGAAGAA GAAGAGAGTA
  ATGGGTGAGT TTGCATTATA GTAACTCATT CTTGTGGTGA CTGGTCTAGC CACGTGAGAC
  W
  CGCTCTAGTT CACAGAGGTC TAATTTAGTC TAGAGAGATA TAACTCAGTC TCTTGAGAAA
  AGACAGAAAC TTGCTTGTGA GCTCGATGCT CCATGACTTC ATCACCTAGA AAATGCCCCA
  CCCCCGACCT TGACACATTA AGGAATCAAG ATTCGGCATG AACAAACCTC AGTACCTTCT
  TTTATGACCG TGGTCTTCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696248	NES15540329	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49079606					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696248	NES15540329	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112575156 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	544 bp upstream
Gm59881	predicted gene, 59881	732 bp upstream
Gm59893	predicted gene, 59893	206 bp downstream
Rr369776	regulatory region 369776	879 bp upstream
Rr395952	regulatory region 395952	within coordinates
Rr403991	regulatory region 403991	1360 bp upstream
Rr486370	regulatory region 486370	590 bp distal
Rr486371	regulatory region 486371	89 bp distal
Rr486372	regulatory region 486372	253 bp proximal
Rr486373	regulatory region 486373	754 bp proximal
Rr486374	regulatory region 486374	1409 bp proximal
Tssr121117	transcription start site region 121117	444 bp downstream
Tssr121118	transcription start site region 121118	390 bp downstream
Tssr124051	transcription start site region 124051	560 bp upstream
Tssr124052	transcription start site region 124052	1365 bp downstream