rs49079704 SNP Detail

Summary

• ID
  rs49079704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102335142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGAGTC TGGCAGAAGG
  GCGTTTTGTA GGAACGAGAG CAGAAGCCTG TAGGACTGAG ATCAGGTCGT CCTCAGGTTG
  TTACTCCTTC TTGCTGTTTC CCCTGCTTTC TGTCTCTCTG CTTCCACCGT CTCCACCCAG
  CCATGAGATC CAGAATCCTA AGATCCAGTT GTGCACTAAC GAATACTGAA CTCAAAGGCC
  Y
  ATGTACGCTC CAGCGGAGGG ATCATGGAGT AAGCATCCTC CTTTCACCCC CTCACCCCCT
  CGACTGTTCT GAAATGCTGG GGATTTAACA AGAATCTCAA GCATGCTAGG CAGATGCCTA
  AGTCTTCTTA CTCTCCCAAC TGCACCCGTG GCAGCCATAT TCTCCTCAGT GCTATGTGCA
  GTGCTTGGAC CCGGGGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61043698	NES16084952	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49079704					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61043698	NES16084952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102335142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	1039 bp proximal
Gm45527	predicted gene 45527	within coordinates
Rr652623	regulatory region 652623	706 bp proximal
Rr652624	regulatory region 652624	1325 bp proximal
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	1317 bp downstream