rs49080429 SNP Detail

Summary

• ID
  rs49080429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31897305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCCCTA CTACCGCCAG
  TCCCTCTTCC GCACTGTGCT GGACTCGGGC ATCTCTGAGG TAAGATGCAA CCACACTGGT
  TCCTCCTAGC TGCTCAGAGG GGTCTTGGTC TTGTCTAGAG GACAGCTAGG GATCCTCGAG
  GGGCACTATG ACCCTGTGCT CTCCTCAAGC AATGTCCCAG CCTCTCCCAG CCTCGTACCC
  R
  GCAGAGGTTG GGTGTGCACC CACATGCCTA TGCTGAAGCC ACCCACATCA CCGGGATTGG
  GGTCGGAGGA GGAGACCAAC CAGCCCGAGC CCGACTGCTG TCTTTTCCTC CCATCAGCTC
  ATGACCCATA TGTGGTTTGT AATGCACCAA CCACATGCTG GAAACCCCAA GAACAACCCC
  GTCAAGGCAA GTTACATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257447	NES15753520	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49080429					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257447	NES15753520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31897305 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	184 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	392 bp downstream
Tssr143681	transcription start site region 143681	593 bp upstream
Tssr143682	transcription start site region 143682	1238 bp upstream
Tssr143683	transcription start site region 143683	1308 bp upstream
Tssr147305	transcription start site region 147305	207 bp upstream
Tssr147306	transcription start site region 147306	165 bp upstream
Tssr147307	transcription start site region 147307	137 bp upstream
Tssr147308	transcription start site region 147308	167 bp downstream