rs49080608 SNP Detail

Summary

• ID
  rs49080608
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145410418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT ATCCCTCATA ATGTCTGATC
  G
  TGTTTCCCCT TCCCTTCTCT GTCCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147872859	ENSMUSSNP2581630	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49080608					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145410418 () rs orientation: forward

Symbol	Name	Function Class
Rr398690	regulatory region 398690	542 bp upstream
Rr398691	regulatory region 398691	1322 bp upstream
Zfp980	zinc finger protein 980	within coordinates