rs49080696 SNP Detail

Summary

• ID
  rs49080696
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24006748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT TCTTTTTCAG AGAATTGACA
  A
  ACAGACACAG ATTCATAAAA GTATG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145332774	ENSMUSSNP7214329	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss325327355	CHEV_17_23924741	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49080696					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24006748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	1454 bp distal
Flywch2	FLYWCH family member 2	1693 bp upstream
Rr523143	regulatory region 523143	1704 bp distal
Rr523144	regulatory region 523144	1203 bp distal
Rr523145	regulatory region 523145	1381 bp distal
Rr523146	regulatory region 523146	373 bp distal
Rr523147	regulatory region 523147	1966 bp proximal
Tssr146663	transcription start site region 146663	1691 bp upstream
Tssr146664	transcription start site region 146664	1652 bp upstream
Tssr146665	transcription start site region 146665	1537 bp upstream