rs49081241 SNP Detail

Summary

• ID
  rs49081241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58009300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT CTTCACATCA GCCTCCTTCC
  Y
  TCCAGGGGAC TCTAGGTTGT GGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147190401	ENSMUSSNP109597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325635288	CHEV_18_58035882	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49081241					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58009300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	1499 bp proximal
Rr393751	regulatory region 393751	1220 bp upstream