rs49081655 SNP Detail

Summary

• ID
  rs49081655
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCG TGGGTTAGTG AGCACTCCAA
  S
  GTTTTAAAAC CTTAAAATAT AGCAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147546858	ENSMUSSNP6903237	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss321352213	CHEV_4_134987943	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49081655					SNP	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	1143 bp proximal
Gm15979	predicted gene 15979	1187 bp upstream
Gm69862	predicted gene, 69862	1901 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr39615	transcription start site region 39615	1988 bp upstream
Tssr43991	transcription start site region 43991	1716 bp downstream